NCBI BLAST URL API — BLAST

naftiko: 1.0.0-alpha2
info:
  label: NCBI BLAST URL API — BLAST
  description: 'NCBI BLAST URL API — BLAST. 2 operations. Lead operation: Submit BLAST Search. Self-contained Naftiko capability
    covering one United States National Library Of Medicine business surface.'
  tags:
  - United States National Library Of Medicine
  - BLAST
  created: '2026-05-19'
  modified: '2026-05-19'
binds:
- namespace: env
  keys:
    UNITED_STATES_NATIONAL_LIBRARY_OF_MEDICINE_API_KEY: UNITED_STATES_NATIONAL_LIBRARY_OF_MEDICINE_API_KEY
capability:
  consumes:
  - type: http
    namespace: ncbi-blast-blast
    baseUri: https://blast.ncbi.nlm.nih.gov/blast
    description: NCBI BLAST URL API — BLAST business capability. Self-contained, no shared references.
    resources:
    - name: Blast.cgi
      path: /Blast.cgi
      operations:
      - name: submitblastsearch
        method: PUT
        description: Submit BLAST Search
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
      - name: getblastresults
        method: GET
        description: Get BLAST Results or Status
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: CMD
          in: query
          type: string
          description: Command type (Get to check status/retrieve results)
          required: true
        - name: RID
          in: query
          type: string
          description: Request ID from submission response
          required: true
        - name: FORMAT_TYPE
          in: query
          type: string
          description: Output format for results
        - name: HITLIST_SIZE
          in: query
          type: integer
          description: Number of hits to retrieve in results
  exposes:
  - type: rest
    namespace: ncbi-blast-blast-rest
    port: 8080
    description: REST adapter for NCBI BLAST URL API — BLAST. One Spectral-compliant resource per consumed operation, prefixed
      with /v1.
    resources:
    - path: /v1/blast-cgi
      name: blast-cgi
      description: REST surface for Blast.cgi.
      operations:
      - method: PUT
        name: submitblastsearch
        description: Submit BLAST Search
        call: ncbi-blast-blast.submitblastsearch
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
      - method: GET
        name: getblastresults
        description: Get BLAST Results or Status
        call: ncbi-blast-blast.getblastresults
        with:
          CMD: rest.CMD
          RID: rest.RID
          FORMAT_TYPE: rest.FORMAT_TYPE
          HITLIST_SIZE: rest.HITLIST_SIZE
        outputParameters:
        - type: object
          mapping: $.
  - type: mcp
    namespace: ncbi-blast-blast-mcp
    port: 9090
    transport: http
    description: MCP adapter for NCBI BLAST URL API — BLAST. One tool per consumed operation, routed inline through this capability's
      consumes block.
    tools:
    - name: submit-blast-search
      description: Submit BLAST Search
      hints:
        readOnly: false
        destructive: false
        idempotent: true
      call: ncbi-blast-blast.submitblastsearch
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: get-blast-results-status
      description: Get BLAST Results or Status
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: ncbi-blast-blast.getblastresults
      with:
        CMD: tools.CMD
        RID: tools.RID
        FORMAT_TYPE: tools.FORMAT_TYPE
        HITLIST_SIZE: tools.HITLIST_SIZE
      outputParameters:
      - type: object
        mapping: $.